Plugins

Browse plugins: 442

Cryo-FIB/SEM Image Post-Processing

napari-cryofibsem-imgpro

A napari plugin for post-processing of Cryo-FIB/SEM image stacks

  • Shaina Vivienne To
  • First released:

    19 September 2024
  • Last updated:

    19 September 2024
  • Installs:

    2
  • Plugin type:

    Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation

Manini

manini

An user-friendly plugin that enables to annotate images from a pre-trained model (segmentation, classification, detection) given by an user.

  • Herearii Metuarea
  • First released:

    04 November 2023
  • Last updated:

    18 September 2024
  • Installs:

    238
  • Plugin type:

    Widget

napari ConvPaint

napari-convpaint

A plugin for segmentation by pixel classification using convolutional feature extraction

  • Guillaume Witz
  • First released:

    01 November 2023
  • Last updated:

    17 September 2024
  • Installs:

    1.6K
  • Plugin type:

    Sample data, Widget

Tapenade Processing

napari-tapenade-processing

A visual pipeline to process images with Tapenade in Napari

  • Jules Vanaret
  • First released:

    13 August 2024
  • Last updated:

    17 September 2024
  • Installs:

    27
  • Plugin type:

    Widget
Workflow step:
Image segmentation
Image annotation

brainglobe-segmentation

brainglobe-segmentation

Segmentation of anatomical structures in a common coordinate space

  • Adam Tyson
  • Horst Obenhaus
  • BrainGlobe Developers
  • First released:

    06 November 2023
  • Last updated:

    17 September 2024
  • Installs:

    3.6K
  • Plugin type:

    Widget

napari OME-Zarr Navigator

napari-ome-zarr-navigator

A plugin to browse OME-Zarr plates by conditions and load images, labels and features from ROIs

  • Fabio Steffen
  • Joel Luethi
  • First released:

    19 July 2024
  • Last updated:

    17 September 2024
  • Installs:

    65
  • Plugin type:

    Sample data, Widget
Workflow step:
Visualization

neuralDev

napari-ndev

A collection of widgets to process images from start to finish--focused on neural development.

  • Tim Monko
  • First released:

    31 January 2023
  • Last updated:

    17 September 2024
  • Installs:

    484
  • Plugin type:

    Widget

napari feature classifier

napari-feature-classifier

An interactive classifier plugin to use with label images and feature measurements

  • Joel Luethi
  • Maks Hess
  • First released:

    12 February 2022
  • Last updated:

    16 September 2024
  • Installs:

    736
  • Plugin type:

    Widget

napari ARCOS

arcos-gui

A napari plugin to detect and visualize collective signaling events

  • Benjamin Grädel
  • First released:

    24 February 2022
  • Last updated:

    12 September 2024
  • Installs:

    587
  • Plugin type:

    Sample data, Widget

cylindra

cylindra

Spectral analysis, simulation and subtomogram averaging of heterogenic cylindrical structures

  • Hanjin Liu
  • First released:

    01 May 2024
  • Last updated:

    12 September 2024
  • Installs:

    784
  • Plugin type:

    Widget

napari-save-transformed

napari-save-transformed

Napari plugin to save layers with their transforms applied.

    • First released:

      02 July 2024
    • Last updated:

      11 September 2024
    • Installs:

      57
    • Plugin type:

      Writer

    TARDIS-em napari plugin

    napari-tardis-em

    Tomogram and micrograph segmentation with TARDIS-em

    • Robert Kiewisz
    • First released:

      22 July 2024
    • Last updated:

      11 September 2024
    • Installs:

      100
    • Plugin type:

      Reader, Widget

    napari-plugin-manager

    napari-plugin-manager

    Install plugins for napari, in napari.

      • First released:

        11 May 2023
      • Last updated:

        09 September 2024
      • Installs:

        95K
      • Plugin type:

        information not submitted

      Manual registration

      napari-manual-registration

      A simple plugin to register 2 views of the same object

      • Alice Gros
      • Jules Vanaret
      • First released:

        13 August 2024
      • Last updated:

        09 September 2024
      • Installs:

        40
      • Plugin type:

        Widget

      Spatial Correlation Plotter

      napari-spatial-correlation-plotter

      A plugin to compute and display spatial correlation histograms in Napari

      • Jules Vanaret
      • First released:

        13 August 2024
      • Last updated:

        09 September 2024
      • Installs:

        30
      • Plugin type:

        Widget
      Workflow step:
      Image annotation
      Image segmentation